BioPAX : Biological Pathways Exchange
       

 

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BioPAX Level 1, version 0.5.1 (draft release)

  • Release date - October 9, 2003


  • Release notes - Please note that this version of BioPAX is at draft-release stage. This release provides a preview of the BioPAX pathway data exchange format in order to generate discussion and feedback from the community, which we will use to refine the ontology. Large changes, based on community feedback, may be made before the next draft is released.


  • Changes since last release - The Protege and OWL files have been updated to work with Protege 2.0 beta.


  • License - The ontology files and accompanying documentation are freely available under the GNU LGPL license.


  • Documentation
    DescriptionFile
    General documentation about BioPAXPDF
    Documentation about the BioPAX ontology PDF
    GKB-generated ontology documentationHTML

  • Ontology files
    DescriptionFile
    OWL* version of ontologybiopax-level1-v0.5.1.owl
    XML Schema versionComing soon!
    GKB ontology editor project filebiopax-level1-v0.5.1.gkb
    Protege ontology editor files (Note: Requires Protege 2.0 beta with OWL plugin* installed)biopax-level1-v0.5.1.pprj
    biopax-level1-v0.5.1.owl

  • Feedback - We request feedback on the BioPAX ontology via the biopax-discuss email list (Member posting only, join here).

  • Issues - Any issues that are raised on this discussion list will be tracked using SourceForge in the BioPAX bug tracker.


  • Previous releases - Level 1, version 0.5



    • * Please note: the WebOnt W3C working group would like to hear about projects that are using OWL ontologies. Please share your experience and link your project with the Semantic Web community by sending an email to the public-webont-comments@w3.org mailing list.