User: Emek Demir Date: Jan 18, 2007 Time: 4:56:53 PM
In this example we get all the unification xrefs in the model
and check if they point to the Gene Ontology.
This example class processes all the Level2 BioPAX OWL
files in the input directory to find all the protein names
Notes:
- recent fix: it doesn't traverse into the NEXT-STEP property,
as it may lead beyond the boundaries of the pathway of interest!
- one may prefer using the Paxtools' jenaIO instead of the simpleIO:
import org.biopax.paxtools.io.jena.JenaIOHandler;
JenaIOHandler handler = new JenaIOHandler(null, BioPAXLevel.L2);