org.biopax.paxtools.examples
Class PathwayGenesExtractor

java.lang.Object
  org.biopax.paxtools.examples.PathwayGenesExtractor

All Implemented Interfaces:

Visitor

public class PathwayGenesExtractor
extends java.lang.Object
implements Visitor

Prints all the genes (aka proteins) in the L2 pathway and sub-pathways (*conditions apply), and also - trace where they come from. * Note: it doesn't traverse the 'NEXT-STEP' property! (as doing so may take you beyond the pathway of interest)

Author:

rodch

Constructor Summary

PathwayGenesExtractor(pathway pw)

Method Summary

static void	main(java.lang.String[] args)
void	visit(BioPAXElement domain1, java.lang.Object range, Model model, PropertyEditor editor)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PathwayGenesExtractor

public PathwayGenesExtractor(pathway pw)

Method Detail

main

public static void main(java.lang.String[] args)
                 throws java.io.FileNotFoundException

Throws:

java.io.FileNotFoundException

visit

public void visit(BioPAXElement domain1,
                  java.lang.Object range,
                  Model model,
                  PropertyEditor editor)

Specified by:

visit in interface Visitor