org.biopax.paxtools.examples
Class ReactomeEntitySetUnificationXrefFix

java.lang.Object
  org.biopax.paxtools.examples.ReactomeEntitySetUnificationXrefFix

public class ReactomeEntitySetUnificationXrefFix
extends java.lang.Object

This is a class I wrote for fixing the unification xref problem in Reactome entity sets. It basically reads in the model, goes over physical entities and looks for the converted from reactome entity set comment. For each such generic entities it converts all of its unification xrefs to relationship xrefs

Constructor Summary

ReactomeEntitySetUnificationXrefFix()

Method Summary

static void	fixReactome(java.io.InputStream in, java.io.OutputStream out)
static void	main(java.lang.String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReactomeEntitySetUnificationXrefFix

public ReactomeEntitySetUnificationXrefFix()

Method Detail

main

public static void main(java.lang.String[] args)
                 throws java.io.IOException

Throws:

java.io.IOException

fixReactome

public static void fixReactome(java.io.InputStream in,
                               java.io.OutputStream out)
                        throws java.io.IOException

Throws:

java.io.IOException