org.biopax.paxtools.examples
Class Tutorial

java.lang.Object
  org.biopax.paxtools.examples.Tutorial

public class Tutorial
extends java.lang.Object

Constructor Summary

Tutorial()

Method Summary

java.util.Set	access1(Complex complex)
java.util.Set	access2(Complex complex)
void	graphQuery(Model model, PhysicalEntity entity3, PhysicalEntity entity2, PhysicalEntity entity1)
void	highlightWorkaround()
static void	IO(java.io.InputStream inputStreamFromFile, java.io.OutputStream outputStream)
static void	merge(EditorMap editorMap, Model srcModel2, Model srcModel1)
static void	myFirstModel()
static void	tempted(BioPAXIOHandler handler, java.io.InputStream inputStream, java.io.OutputStream outputStream)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Tutorial

public Tutorial()

Method Detail

myFirstModel

public static void myFirstModel()

IO

public static void IO(java.io.InputStream inputStreamFromFile,
                      java.io.OutputStream outputStream)

tempted

public static void tempted(BioPAXIOHandler handler,
                           java.io.InputStream inputStream,
                           java.io.OutputStream outputStream)

merge

public static void merge(EditorMap editorMap,
                         Model srcModel2,
                         Model srcModel1)

access1

public java.util.Set access1(Complex complex)

access2

public java.util.Set access2(Complex complex)

graphQuery

public void graphQuery(Model model,
                       PhysicalEntity entity3,
                       PhysicalEntity entity2,
                       PhysicalEntity entity1)

highlightWorkaround

public void highlightWorkaround()