org.biopax.paxtools.controller
Class FeatureUtils

java.lang.Object
  org.biopax.paxtools.controller.FeatureUtils

public class FeatureUtils
extends java.lang.Object

This class provides operations for comparing features of physical entities.

Field Summary

static int	FEATURE
static org.apache.commons.logging.Log	log
static int	NOT_FEATURE
static int	UNKNOWN_FEATURE

Constructor Summary

FeatureUtils()

Method Summary

static boolean	checkERFeatureSet(EntityReference er, boolean fix)
static boolean	checkMutuallyExclusiveSets(PhysicalEntity pe)
static java.util.Set<EntityFeature>	findFeaturesAddedToSecond(PhysicalEntity first, PhysicalEntity second, boolean fix)
static java.util.Set<EntityFeature>	getFeatureIntersection(PhysicalEntity first, int firstClass, PhysicalEntity second, int secondClass)
static java.util.Set<EntityFeature>	getFeatureSetByType(PhysicalEntity pe, int type)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

FEATURE

public static final int FEATURE

See Also:

Constant Field Values

NOT_FEATURE

public static final int NOT_FEATURE

See Also:

Constant Field Values

UNKNOWN_FEATURE

public static final int UNKNOWN_FEATURE

See Also:

Constant Field Values

log

public static org.apache.commons.logging.Log log

Constructor Detail

FeatureUtils

public FeatureUtils()

Method Detail

getFeatureIntersection

public static java.util.Set<EntityFeature> getFeatureIntersection(PhysicalEntity first,
                                                                  int firstClass,
                                                                  PhysicalEntity second,
                                                                  int secondClass)

getFeatureSetByType

public static java.util.Set<EntityFeature> getFeatureSetByType(PhysicalEntity pe,
                                                               int type)

checkERFeatureSet

public static boolean checkERFeatureSet(EntityReference er,
                                        boolean fix)

checkMutuallyExclusiveSets

public static boolean checkMutuallyExclusiveSets(PhysicalEntity pe)

findFeaturesAddedToSecond

public static java.util.Set<EntityFeature> findFeaturesAddedToSecond(PhysicalEntity first,
                                                                     PhysicalEntity second,
                                                                     boolean fix)