org.biopax.paxtools.controller
Class Traverser

java.lang.Object
  org.biopax.paxtools.controller.Traverser

Direct Known Subclasses:

AbstractTraverser, TraverserBilinked

public class Traverser
extends java.lang.Object

This is a utility class for traversing over the dependent objects of a biopax element, based on property editors

Field Summary

protected EditorMap	editorMap
protected Filter<PropertyEditor>[]	filters
protected org.apache.commons.logging.Log	log
protected Visitor	visitor

Constructor Summary

Traverser(EditorMap editorMap, Visitor visitor, Filter<PropertyEditor>... filters)

Method Summary

protected boolean	filter(PropertyEditor editor)
Visitor	getVisitor()
void	setVisitor(Visitor visitor)
void	traverse(BioPAXElement element, Model model) Traverse and visit Visitor all properties of the element.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

editorMap

protected final EditorMap editorMap

visitor

protected Visitor visitor

filters

protected Filter<PropertyEditor>[] filters

log

protected final org.apache.commons.logging.Log log

Constructor Detail

Traverser

public Traverser(EditorMap editorMap,
                 Visitor visitor,
                 Filter<PropertyEditor>... filters)

Method Detail

setVisitor

public void setVisitor(Visitor visitor)

getVisitor

public Visitor getVisitor()

traverse

public void traverse(BioPAXElement element,
                     Model model)

Traverse and visit Visitor all properties of the element. This method does not traverse iteratively to the values.

Parameters:

element - BioPAX element to be traversed

model - to be traversed, but not necessarily (depends on the Visitor implementation).

filter

protected boolean filter(PropertyEditor editor)