Uses of Interface
org.biopax.paxtools.controller.Visitor

Packages that use Visitor

org.biopax.paxtools.controller

Uses of Visitor in org.biopax.paxtools.controller

Classes in org.biopax.paxtools.controller that implement Visitor

class	AbstractTraverser This is a convenience all-in-one Traverser/Visitor that keeps track in the model and prevents infinite loops.
class	Cloner Specifically "Clones" the BioPAX elements set (traverses to obtain dependent elements), puts them to the new model using the visitor and traverser framework; ignores elements that are not in the source list (compare to Fetcher)
class	Completer This class is used for getting a valid subgraph from a set of BioPAX elements.
class	Fetcher This class is used to fetch an element (traverse it to obtain its dependent elements) and to add this element into a model using the visitor and traverse functions.
class	Merger Utility class to merge multiple biopax models into one.
class	PropertyReasoner A tool to set or infer a particular BioPAX property for an object and all its children.
class	ShallowCopy Specifically "Clones" the BioPAX elements set (traverses to obtain dependent elements), puts them to the new model using the visitor and traverser framework; ignores elements that are not in the source list (compare to Fetcher)

Fields in org.biopax.paxtools.controller declared as Visitor

protected Visitor

Traverser.visitor

Methods in org.biopax.paxtools.controller that return Visitor

Visitor

Traverser.getVisitor()

Methods in org.biopax.paxtools.controller with parameters of type Visitor

void	Traverser.setVisitor(Visitor visitor)

Constructors in org.biopax.paxtools.controller with parameters of type Visitor

Traverser(EditorMap editorMap, Visitor visitor, Filter<PropertyEditor>... filters)

TraverserBilinked(EditorMap editorMap, Visitor visitor, PropertyFilterBilinked... filters)