org.biopax.paxtools.impl
Class BioPAXFactoryAdaptor

java.lang.Object
  org.biopax.paxtools.model.BioPAXFactory
      org.biopax.paxtools.impl.BioPAXFactoryAdaptor

Direct Known Subclasses:

Level2FactoryImpl, Level3FactoryImpl

public abstract class BioPAXFactoryAdaptor
extends BioPAXFactory

Constructor Summary

BioPAXFactoryAdaptor()

Method Summary

boolean	canInstantiate(java.lang.Class<? extends BioPAXElement> aClass)
Model	createModel()
<T extends BioPAXElement> java.lang.Class<T>	getImplClass(java.lang.Class<T> aModelInterfaceClass) Get a concrete or abstract BioPAX type (not interface), from org.biopax.paxtools.impl..*, i.e., one that has persistence/search annotations, etc.
protected java.lang.String	mapClassName(java.lang.Class<? extends BioPAXElement> aClass)
protected void	setId(BioPAXElement bpe, java.lang.String uri)

Methods inherited from class org.biopax.paxtools.model.BioPAXFactory

create, create, createInstance, getLevel

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioPAXFactoryAdaptor

public BioPAXFactoryAdaptor()

Method Detail

setId

protected void setId(BioPAXElement bpe,
                     java.lang.String uri)

mapClassName

protected java.lang.String mapClassName(java.lang.Class<? extends BioPAXElement> aClass)

canInstantiate

public boolean canInstantiate(java.lang.Class<? extends BioPAXElement> aClass)

Specified by:

canInstantiate in class BioPAXFactory

createModel

public Model createModel()

Specified by:

createModel in class BioPAXFactory

getImplClass

public <T extends BioPAXElement> java.lang.Class<T> getImplClass(java.lang.Class<T> aModelInterfaceClass)

Description copied from class: BioPAXFactory

Get a concrete or abstract BioPAX type (not interface), from org.biopax.paxtools.impl..*, i.e., one that has persistence/search annotations, etc. This may be required for some DAO and web service controllers; it also returns such abstract BioPAX "adapters" as XReferrableImpl, ProcessImpl, etc.

Specified by:

getImplClass in class BioPAXFactory

Returns: