org.biopax.paxtools.impl.level3
Class L3ElementImpl

java.lang.Object
  org.biopax.paxtools.impl.BioPAXElementImpl
      org.biopax.paxtools.impl.level3.L3ElementImpl

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, BioPAXElement, Level3Element

Direct Known Subclasses:

ChemicalStructureImpl, DeltaGImpl, EntityFeatureImpl, ExperimentalFormImpl, KPrimeImpl, PathwayStepImpl, SequenceLocationImpl, StoichiometryImpl, XReferrableImpl, XrefImpl

@Entity
public abstract class L3ElementImpl
extends BioPAXElementImpl
implements Level3Element

Base BioPAX Level3 element.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

L3ElementImpl()

Method Summary

void	addComment(java.lang.String COMMENT) A textual comment about this individual.
java.util.Set<java.lang.String>	getComment() A textual comment about this individual.
void	removeComment(java.lang.String COMMENT) A textual comment about this individual.
void	setComment(java.util.Set<java.lang.String> comment)

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

equivalenceCode, getAnnotations, getProxyId, getRDFId, getVersion, isEquivalent, semanticallyEquivalent, setProxyId, setRDFId, setVersion, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Constructor Detail

L3ElementImpl

public L3ElementImpl()

Method Detail

getComment

@Field(name="comment",
       index=TOKENIZED)
@FieldBridge(impl=SetStringBridge.class)
public java.util.Set<java.lang.String> getComment()

Description copied from interface: Level3Element

A textual comment about this individual. This property should be used instead of the OWL documentation elements (rdfs:comment) for instances because information in 'comment' is data to be exchanged, whereas the rdfs:comment field is used for metadata about the structure of the BioPAX ontology. Contents of this set should not be modified. Use Add/Remove instead.

Specified by:

getComment in interface Level3Element

Returns:

A textual comment about this individual.

setComment

public void setComment(java.util.Set<java.lang.String> comment)

addComment

public void addComment(java.lang.String COMMENT)

Description copied from interface: Level3Element

A textual comment about this individual. This property should be used instead of the OWL documentation elements (rdfs:comment) for instances because information in 'comment' is data to be exchanged, whereas the rdfs:comment field is used for metadata about the structure of the BioPAX ontology. Contents of this set should not be modified. Use Add/Remove instead.

Specified by:

addComment in interface Level3Element

Parameters:

COMMENT - A textual comment about this individual.

removeComment

public void removeComment(java.lang.String COMMENT)

Description copied from interface: Level3Element

A textual comment about this individual. This property should be used instead of the OWL documentation elements (rdfs:comment) for instances because information in 'comment' is data to be exchanged, whereas the rdfs:comment field is used for metadata about the structure of the BioPAX ontology. Contents of this set should not be modified. Use Add/Remove instead.

Specified by:

removeComment in interface Level3Element

Parameters:

COMMENT - A textual comment about this individual.