org.biopax.paxtools.impl.level3
Class NamedImpl

java.lang.Object
  org.biopax.paxtools.impl.BioPAXElementImpl
      org.biopax.paxtools.impl.level3.L3ElementImpl
          org.biopax.paxtools.impl.level3.XReferrableImpl
              org.biopax.paxtools.impl.level3.NamedImpl

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, BioPAXElement, Level3Element, XReferrable

Direct Known Subclasses:

BioSourceImpl, EntityImpl, EntityReferenceImpl, ProvenanceImpl

@Entity
public abstract class NamedImpl
extends XReferrableImpl

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

NamedImpl()

Method Summary

void	addName(java.lang.String name)
java.lang.String	getDisplayName()
protected java.lang.String	getDisplayNameX()
java.util.Set<java.lang.String>	getName()
protected java.util.Set<java.lang.String>	getNameX()
java.lang.String	getStandardName()
protected java.lang.String	getStandardNameX()
void	removeName(java.lang.String name)
void	setDisplayName(java.lang.String displayName)
protected void	setDisplayNameX(java.lang.String displayName)
void	setName(java.util.Set<java.lang.String> names)
protected void	setNameX(java.util.Set<java.lang.String> names)
void	setStandardName(java.lang.String name)
protected void	setStandardNameX(java.lang.String name)

Methods inherited from class org.biopax.paxtools.impl.level3.XReferrableImpl

addXref, equivalenceCode, getXref, hasCommonUnificationXref, removeXref, semanticallyEquivalent, setXref

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

getAnnotations, getProxyId, getRDFId, getVersion, isEquivalent, setProxyId, setRDFId, setVersion, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

getAnnotations, getModelInterface, getRDFId, isEquivalent

Constructor Detail

NamedImpl

public NamedImpl()

Method Detail

getStandardNameX

@Field(name="name",
       index=TOKENIZED)
@Boost(value=2.0f)
protected java.lang.String getStandardNameX()

setStandardNameX

protected void setStandardNameX(java.lang.String name)

getStandardName

public java.lang.String getStandardName()

setStandardName

public void setStandardName(java.lang.String name)

getDisplayNameX

@Field(name="name",
       index=TOKENIZED)
@Boost(value=2.0f)
protected java.lang.String getDisplayNameX()

setDisplayNameX

protected void setDisplayNameX(java.lang.String displayName)

getDisplayName

public java.lang.String getDisplayName()

setDisplayName

public void setDisplayName(java.lang.String displayName)

getNameX

@Field(name="name",
       index=TOKENIZED)
@FieldBridge(impl=SetStringBridge.class)
@Boost(value=1.0f)
protected java.util.Set<java.lang.String> getNameX()

setNameX

protected void setNameX(java.util.Set<java.lang.String> names)

getName

public java.util.Set<java.lang.String> getName()

setName

public void setName(java.util.Set<java.lang.String> names)

addName

public void addName(java.lang.String name)

removeName

public void removeName(java.lang.String name)