org.biopax.paxtools.impl.level3
Class ProcessImpl

java.lang.Object
  org.biopax.paxtools.impl.BioPAXElementImpl
      org.biopax.paxtools.impl.level3.L3ElementImpl
          org.biopax.paxtools.impl.level3.XReferrableImpl
              org.biopax.paxtools.impl.level3.NamedImpl
                  org.biopax.paxtools.impl.level3.EntityImpl
                      org.biopax.paxtools.impl.level3.ProcessImpl

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, BioPAXElement, Entity, Level3Element, Named, Observable, Process, XReferrable

Direct Known Subclasses:

InteractionImpl, PathwayImpl

@Entity
public abstract class ProcessImpl
extends EntityImpl
implements Process

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

ProcessImpl()

Method Summary

java.util.Set<Control>	getControlledOf()
java.util.Set<Pathway>	getPathwayComponentOf()
java.util.Set<PathwayStep>	getStepProcessOf()
protected void	setControlledOf(java.util.Set<Control> controlledOf)
protected void	setPathwayComponentOf(java.util.Set<Pathway> pathwayComponentOf)
protected void	setStepProcessOf(java.util.Set<PathwayStep> stepProcessOf)

Methods inherited from class org.biopax.paxtools.impl.level3.EntityImpl

addAvailability, addDataSource, addEvidence, getAvailability, getDataSource, getEvidence, getParticipantOf, removeAvailability, removeDataSource, removeEvidence, semanticallyEquivalent, setAvailability, setDataSource, setEvidence, setParticipantOf

Methods inherited from class org.biopax.paxtools.impl.level3.NamedImpl

addName, getDisplayName, getDisplayNameX, getName, getNameX, getStandardName, getStandardNameX, removeName, setDisplayName, setDisplayNameX, setName, setNameX, setStandardName, setStandardNameX

Methods inherited from class org.biopax.paxtools.impl.level3.XReferrableImpl

addXref, equivalenceCode, getXref, hasCommonUnificationXref, removeXref, setXref

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

getAnnotations, getProxyId, getRDFId, getVersion, isEquivalent, setProxyId, setRDFId, setVersion, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.Entity

addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Constructor Detail

ProcessImpl

public ProcessImpl()

Method Detail

getPathwayComponentOf

public java.util.Set<Pathway> getPathwayComponentOf()

Specified by:

getPathwayComponentOf in interface Process

getStepProcessOf

public java.util.Set<PathwayStep> getStepProcessOf()

Specified by:

getStepProcessOf in interface Process

getControlledOf

public java.util.Set<Control> getControlledOf()

Specified by:

getControlledOf in interface Process

setControlledOf

protected void setControlledOf(java.util.Set<Control> controlledOf)

setStepProcessOf

protected void setStepProcessOf(java.util.Set<PathwayStep> stepProcessOf)

setPathwayComponentOf

protected void setPathwayComponentOf(java.util.Set<Pathway> pathwayComponentOf)