org.biopax.paxtools.impl.level3
Class PublicationXrefImpl

java.lang.Object
  org.biopax.paxtools.impl.BioPAXElementImpl
      org.biopax.paxtools.impl.level3.L3ElementImpl
          org.biopax.paxtools.impl.level3.XrefImpl
              org.biopax.paxtools.impl.level3.PublicationXrefImpl

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, BioPAXElement, Level3Element, PublicationXref, UtilityClass, Xref

@Entity
@Indexed
public class PublicationXrefImpl
extends XrefImpl
implements PublicationXref

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

PublicationXrefImpl()
Constructor.

Method Summary

void	addAuthor(java.lang.String author)
void	addSource(java.lang.String source)
void	addUrl(java.lang.String url)
java.util.Set<java.lang.String>	getAuthor()
java.lang.Class<? extends PublicationXref>	getModelInterface() This method returns the actual model interface that a class implements.
java.util.Set<java.lang.String>	getSource()
java.lang.String	getTitle()
java.util.Set<java.lang.String>	getUrl()
int	getYear()
void	removeAuthor(java.lang.String author)
void	removeSource(java.lang.String source)
void	removeUrl(java.lang.String url)
protected boolean	semanticallyEquivalent(BioPAXElement other)
void	setAuthor(java.util.Set<java.lang.String> author)
void	setSource(java.util.Set<java.lang.String> source)
void	setTitle(java.lang.String title)
void	setUrl(java.util.Set<java.lang.String> url)
void	setYear(int year)

Methods inherited from class org.biopax.paxtools.impl.level3.XrefImpl

equivalenceCode, getDb, getDbVersion, getId, getIdVersion, getIdx, getXrefOf, setDb, setDbVersion, setId, setIdVersion, setIdx, setXrefOf, toString

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

getAnnotations, getProxyId, getRDFId, getVersion, isEquivalent, setProxyId, setRDFId, setVersion

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.Xref

getDb, getDbVersion, getId, getIdVersion, getXrefOf, setDb, setDbVersion, setId, setIdVersion

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getRDFId, isEquivalent

Constructor Detail

PublicationXrefImpl

public PublicationXrefImpl()

Constructor.

Method Detail

getModelInterface

public java.lang.Class<? extends PublicationXref> getModelInterface()

Description copied from interface: BioPAXElement

This method returns the actual model interface that a class implements.

Specified by:

getModelInterface in interface BioPAXElement

Returns:

an interface from org.biopax.paxtools.model package corresponding to a BioPAX class.

getAuthor

@Field(name="keyword",
       index=TOKENIZED)
@FieldBridge(impl=SetStringBridge.class)
public java.util.Set<java.lang.String> getAuthor()

Specified by:

getAuthor in interface PublicationXref

setAuthor

public void setAuthor(java.util.Set<java.lang.String> author)

addAuthor

public void addAuthor(java.lang.String author)

Specified by:

addAuthor in interface PublicationXref

removeAuthor

public void removeAuthor(java.lang.String author)

Specified by:

removeAuthor in interface PublicationXref

getSource

@Field(name="keyword",
       index=TOKENIZED)
@FieldBridge(impl=SetStringBridge.class)
public java.util.Set<java.lang.String> getSource()

Specified by:

getSource in interface PublicationXref

setSource

public void setSource(java.util.Set<java.lang.String> source)

addSource

public void addSource(java.lang.String source)

Specified by:

addSource in interface PublicationXref

removeSource

public void removeSource(java.lang.String source)

Specified by:

removeSource in interface PublicationXref

getTitle

@Field(name="keyword",
       index=TOKENIZED)
public java.lang.String getTitle()

Specified by:

getTitle in interface PublicationXref

setTitle

public void setTitle(java.lang.String title)

Specified by:

setTitle in interface PublicationXref

getUrl

@Field(name="keyword",
       index=TOKENIZED)
@FieldBridge(impl=SetStringBridge.class)
public java.util.Set<java.lang.String> getUrl()

Specified by:

getUrl in interface PublicationXref

setUrl

public void setUrl(java.util.Set<java.lang.String> url)

addUrl

public void addUrl(java.lang.String url)

Specified by:

addUrl in interface PublicationXref

removeUrl

public void removeUrl(java.lang.String url)

Specified by:

removeUrl in interface PublicationXref

getYear

@Field(name="keyword",
       index=TOKENIZED)
public int getYear()

Specified by:

getYear in interface PublicationXref

setYear

public void setYear(int year)

Specified by:

setYear in interface PublicationXref

semanticallyEquivalent

protected boolean semanticallyEquivalent(BioPAXElement other)

Overrides:

semanticallyEquivalent in class XrefImpl