org.biopax.paxtools.impl.level3
Class TransportWithBiochemicalReactionImpl

java.lang.Object
  org.biopax.paxtools.impl.BioPAXElementImpl
      org.biopax.paxtools.impl.level3.L3ElementImpl
          org.biopax.paxtools.impl.level3.XReferrableImpl
              org.biopax.paxtools.impl.level3.NamedImpl
                  org.biopax.paxtools.impl.level3.EntityImpl
                      org.biopax.paxtools.impl.level3.ProcessImpl
                          org.biopax.paxtools.impl.level3.InteractionImpl
                              org.biopax.paxtools.impl.level3.ConversionImpl
                                  org.biopax.paxtools.impl.level3.BiochemicalReactionImpl
                                      org.biopax.paxtools.impl.level3.TransportWithBiochemicalReactionImpl

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, BioPAXElement, BiochemicalReaction, Conversion, Entity, Interaction, Level3Element, Named, Observable, Process, Transport, TransportWithBiochemicalReaction, XReferrable

@Entity
@Indexed
public class TransportWithBiochemicalReactionImpl
extends BiochemicalReactionImpl
implements TransportWithBiochemicalReaction

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

SEARCH_FIELD_AVAILABILITY, SEARCH_FIELD_COMMENT, SEARCH_FIELD_EC_NUMBER, SEARCH_FIELD_KEYWORD, SEARCH_FIELD_NAME, SEARCH_FIELD_SEQUENCE, SEARCH_FIELD_TERM, SEARCH_FIELD_XREF_DB, SEARCH_FIELD_XREF_ID, SEARCH_INDEX_NAME

Constructor Summary

TransportWithBiochemicalReactionImpl()

Method Summary

java.lang.Class<? extends TransportWithBiochemicalReaction>

getModelInterface() This method returns the actual model interface that a class implements.

Methods inherited from class org.biopax.paxtools.impl.level3.BiochemicalReactionImpl

addDeltaG, addDeltaH, addDeltaS, addECNumber, addKEQ, getDeltaG, getDeltaH, getDeltaS, getECNumber, getKEQ, removeDeltaG, removeDeltaH, removeDeltaS, removeECNumber, removeKEQ, setDeltaG, setDeltaH, setDeltaS, setECNumber, setKEQ

Methods inherited from class org.biopax.paxtools.impl.level3.ConversionImpl

addLeft, addParticipantStoichiometry, addRight, equivalenceCode, getConversionDirection, getLeft, getParticipantStoichiometry, getRight, getSpontaneous, removeLeft, removeParticipantStoichiometry, removeRight, semanticallyEquivalent, setConversionDirection, setLeft, setParticipantStoichiometry, setRight, setSpontaneous

Methods inherited from class org.biopax.paxtools.impl.level3.InteractionImpl

addInteractionType, addParticipant, getInteractionType, getParticipant, removeInteractionType, removeParticipant, setInteractionType, setParticipant

Methods inherited from class org.biopax.paxtools.impl.level3.ProcessImpl

getControlledOf, getPathwayComponentOf, getStepProcessOf, setControlledOf, setPathwayComponentOf, setStepProcessOf

Methods inherited from class org.biopax.paxtools.impl.level3.EntityImpl

addAvailability, addDataSource, addEvidence, getAvailability, getDataSource, getEvidence, getParticipantOf, removeAvailability, removeDataSource, removeEvidence, setAvailability, setDataSource, setEvidence, setParticipantOf

Methods inherited from class org.biopax.paxtools.impl.level3.NamedImpl

addName, getDisplayName, getDisplayNameX, getName, getNameX, getStandardName, getStandardNameX, removeName, setDisplayName, setDisplayNameX, setName, setNameX, setStandardName, setStandardNameX

Methods inherited from class org.biopax.paxtools.impl.level3.XReferrableImpl

addXref, getXref, hasCommonUnificationXref, removeXref, setXref

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

getAnnotations, getProxyId, getRDFId, getVersion, isEquivalent, setProxyId, setRDFId, setVersion, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.BiochemicalReaction

addDeltaG, addDeltaH, addDeltaS, addECNumber, addKEQ, getDeltaG, getDeltaH, getDeltaS, getECNumber, getKEQ, removeDeltaG, removeDeltaH, removeDeltaS, removeECNumber, removeKEQ

Methods inherited from interface org.biopax.paxtools.model.level3.Conversion

addLeft, addParticipantStoichiometry, addRight, getConversionDirection, getLeft, getParticipantStoichiometry, getRight, getSpontaneous, removeLeft, removeParticipantStoichiometry, removeRight, setConversionDirection, setSpontaneous

Methods inherited from interface org.biopax.paxtools.model.level3.Interaction

addInteractionType, addParticipant, getInteractionType, getParticipant, removeInteractionType, removeParticipant

Methods inherited from interface org.biopax.paxtools.model.level3.Process

getControlledOf, getPathwayComponentOf, getStepProcessOf

Methods inherited from interface org.biopax.paxtools.model.level3.Entity

addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Constructor Detail

TransportWithBiochemicalReactionImpl

public TransportWithBiochemicalReactionImpl()

Method Detail

getModelInterface

public java.lang.Class<? extends TransportWithBiochemicalReaction> getModelInterface()

Description copied from interface: BioPAXElement

This method returns the actual model interface that a class implements.

Specified by:

getModelInterface in interface BioPAXElement

Overrides:

getModelInterface in class BiochemicalReactionImpl

Returns:

an interface from org.biopax.paxtools.model package corresponding to a BioPAX class.