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| Packages that use BioPAXElement.Key | |
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| org.biopax.paxtools.model.level3 | |
| Uses of BioPAXElement.Key in org.biopax.paxtools.model.level3 |
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| Methods in org.biopax.paxtools.model.level3 with annotations of type BioPAXElement.Key | |
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BindingFeature |
BindingFeature.getBindsTo()
A binding feature represents a "half" of the bond between two entities. |
java.util.Set<PhysicalEntity> |
Catalysis.getCofactor()
Any cofactor(s) or coenzyme(s) required for catalysis of the conversion by the enzyme. |
java.util.Set<PhysicalEntity> |
Complex.getComponent()
Defines the PhysicalEntity subunits of this complex. |
java.util.Set<Stoichiometry> |
Complex.getComponentStoichiometry()
The stoichiometry of components in a complex. |
java.lang.Boolean |
BindingFeature.getIntraMolecular()
IntraMolecular flag is true iff this binding feature represents a bond within the same molecule, for example a disulfide bond within the same molecule. |
Conversion |
BiochemicalPathwayStep.getStepConversion()
This method returns the central conversion of this BiochemicalPathwayStep. |
StepDirection |
BiochemicalPathwayStep.getStepDirection()
This property can be used for annotating direction of enzymatic activity. |
java.lang.String |
ChemicalStructure.getStructureData()
This property holds a string defining chemical structure,in one of the three formats: CML, SMILES or InChI. |
StructureFormatType |
ChemicalStructure.getStructureFormat()
This property specifies which format is used to define chemical structure. |
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