Uses of Class
org.biopax.paxtools.model.BioPAXFactory

Packages that use BioPAXFactory

org.biopax.paxtools.controller
org.biopax.paxtools.impl
org.biopax.paxtools.impl.level2
org.biopax.paxtools.impl.level3
org.biopax.paxtools.io
org.biopax.paxtools.model

Uses of BioPAXFactory in org.biopax.paxtools.controller

Constructors in org.biopax.paxtools.controller with parameters of type BioPAXFactory

Cloner(EditorMap map, BioPAXFactory factory)

Uses of BioPAXFactory in org.biopax.paxtools.impl

Subclasses of BioPAXFactory in org.biopax.paxtools.impl

class

BioPAXFactoryAdaptor

Methods in org.biopax.paxtools.impl with parameters of type BioPAXFactory

void	ModelImpl.setFactory(BioPAXFactory factory)

Constructors in org.biopax.paxtools.impl with parameters of type BioPAXFactory

ModelImpl(BioPAXFactory factory)

Uses of BioPAXFactory in org.biopax.paxtools.impl.level2

Subclasses of BioPAXFactory in org.biopax.paxtools.impl.level2

class

Level2FactoryImpl

Uses of BioPAXFactory in org.biopax.paxtools.impl.level3

Subclasses of BioPAXFactory in org.biopax.paxtools.impl.level3

class

Level3FactoryImpl

Uses of BioPAXFactory in org.biopax.paxtools.io

Fields in org.biopax.paxtools.io declared as BioPAXFactory

protected BioPAXFactory

BioPAXIOHandlerAdapter.factory

Methods in org.biopax.paxtools.io that return BioPAXFactory

BioPAXFactory	BioPAXIOHandlerAdapter.getFactory()
BioPAXFactory	BioPAXIOHandler.getFactory()

Methods in org.biopax.paxtools.io with parameters of type BioPAXFactory

protected void	BioPAXIOHandlerAdapter.resetLevel(BioPAXLevel level, BioPAXFactory factory)
void	BioPAXIOHandlerAdapter.setFactory(BioPAXFactory factory)
void	BioPAXIOHandler.setFactory(BioPAXFactory factory)

Constructors in org.biopax.paxtools.io with parameters of type BioPAXFactory

BioPAXIOHandlerAdapter(BioPAXFactory factory, BioPAXLevel level)

SimpleIOHandler(BioPAXFactory factory, BioPAXLevel level)

Uses of BioPAXFactory in org.biopax.paxtools.model

Methods in org.biopax.paxtools.model that return BioPAXFactory

BioPAXFactory

BioPAXLevel.getDefaultFactory() This method returns the default factory for this level

Methods in org.biopax.paxtools.model with parameters of type BioPAXFactory

void	Model.setFactory(BioPAXFactory factory) This method sets the factory this model will use for creating BioPAX objects.