org.biopax.paxtools.model.level2
Interface XReferrable

All Superinterfaces:

BioPAXElement, java.lang.Cloneable, Level2Element, java.io.Serializable

All Known Subinterfaces:

biochemicalReaction, catalysis, complex, complexAssembly, confidence, control, conversion, dataSource, dna, entity, evidence, interaction, modulation, openControlledVocabulary, pathway, physicalEntity, physicalInteraction, process, protein, rna, sequenceEntity, sequenceFeature, smallMolecule, transport, transportWithBiochemicalReaction

public interface XReferrable
extends Level2Element

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

void	addXREF(xref XREF)
java.util.Set<publicationXref>	findCommonPublications(XReferrable that)
java.util.Set<relationshipXref>	findCommonRelationships(XReferrable that)
java.util.Set<unificationXref>	findCommonUnifications(XReferrable that)
java.util.Set<xref>	getXREF()
void	removeXREF(xref XREF)
void	setXREF(java.util.Set<xref> XREF)

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element

addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Method Detail

addXREF

void addXREF(xref XREF)

getXREF

java.util.Set<xref> getXREF()

removeXREF

void removeXREF(xref XREF)

setXREF

void setXREF(java.util.Set<xref> XREF)

findCommonUnifications

java.util.Set<unificationXref> findCommonUnifications(XReferrable that)

findCommonRelationships

java.util.Set<relationshipXref> findCommonRelationships(XReferrable that)

findCommonPublications

java.util.Set<publicationXref> findCommonPublications(XReferrable that)