org.biopax.paxtools.model.level2
Interface bioSource

All Superinterfaces:

BioPAXElement, java.lang.Cloneable, externalReferenceUtilityClass, Level2Element, java.io.Serializable, utilityClass

public interface bioSource
extends externalReferenceUtilityClass

The biological source of an entity (e.g. protein, RNA or DNA). Some entities are considered source-neutral (e.g. small molecules), and the biological source of others can be deduced from their constituentss (e.g. complex, pathway). Examples: HeLa cells, human, and mouse liver tissue.

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

openControlledVocabulary	getCELLTYPE()
java.lang.String	getNAME()
unificationXref	getTAXON_XREF()
openControlledVocabulary	getTISSUE()
void	setCELLTYPE(openControlledVocabulary CELLTYPE)
void	setNAME(java.lang.String NAME)
void	setTAXON_XREF(unificationXref TAXON_XREF)
void	setTISSUE(openControlledVocabulary TISSUE)

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element

addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Method Detail

getCELLTYPE

openControlledVocabulary getCELLTYPE()

setCELLTYPE

void setCELLTYPE(openControlledVocabulary CELLTYPE)

getNAME

java.lang.String getNAME()

setNAME

void setNAME(java.lang.String NAME)

getTAXON_XREF

unificationXref getTAXON_XREF()

setTAXON_XREF

void setTAXON_XREF(unificationXref TAXON_XREF)

getTISSUE

openControlledVocabulary getTISSUE()

setTISSUE

void setTISSUE(openControlledVocabulary TISSUE)