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| Interface Summary | |
|---|---|
| biochemicalReaction | A conversion interaction in which one or more entities (substrates) undergo ovalent changes to become one or more other entities (products). |
| bioSource | The biological source of an entity (e.g. |
| catalysis | A control interaction in which a physical entity (a catalyst) increases the rate of a conversion interaction by lowering its activation energy. |
| chemicalStructure | Describes a small molecule structure. |
| complex | A physical entity whose structure is comprised of other physical entities bound to each other non-covalently, at least one of which is a macromolecule (e.g. |
| complexAssembly | A conversion interaction in which a set of physical entities, at least one being a macromolecule (e.g. |
| confidence | Confidence that the containing instance actually occurs or exists in vivo, usually a statistical measure. |
| control | |
| conversion | |
| dataSource | XREF Should be only unification and publication xrefs |
| deltaGprimeO | |
| dna | |
| entity | This class represents a discrete biological unit used when describing pathways. |
| evidence | |
| experimentalForm | |
| externalReferenceUtilityClass | |
| interaction | |
| InteractionParticipant | marker interface for entities and PEPs |
| kPrime | |
| Level2Element | Created by IntelliJ IDEA. |
| modulation | get controlled should be catalysis |
| openControlledVocabulary | |
| pathway | |
| pathwayComponent | Interface for pathway steps and processes |
| pathwayStep | This represents a set of pathway events. |
| physicalEntity | |
| physicalEntityParticipant | |
| physicalInteraction | |
| process | Tagging interface for entities that needs evidence and can be targeted by a control : Pathway and Interaction |
| protein | |
| publicationXref | |
| relationshipXref | |
| rna | |
| sequenceEntity | User: root Date: Aug 7, 2006 Time: 4:51:19 PM_DOT |
| sequenceFeature | |
| sequenceInterval | |
| sequenceLocation | |
| sequenceParticipant | |
| sequenceSite | |
| smallMolecule | |
| transport | |
| transportWithBiochemicalReaction | |
| unificationXref | |
| utilityClass | |
| xref | |
| XReferrable | |
| Enum Summary | |
|---|---|
| ControlType | User: root Date: Aug 1, 2006 Time: 5:37:34 PM_DOT |
| Direction | Catalysis direction controlled vocabulary |
| PositionStatusType | |
| SpontaneousType | |
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