Hierarchy For Package org.biopax.paxtools.model.level2

Package Hierarchies:

All Packages

Interface Hierarchy

• java.lang.Cloneable
  • org.biopax.paxtools.model.BioPAXElement (also extends java.io.Serializable)
    • org.biopax.paxtools.model.level2.Level2Element
      • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.InteractionParticipant, org.biopax.paxtools.model.level2.XReferrable)
        • org.biopax.paxtools.model.level2.physicalEntity
          • org.biopax.paxtools.model.level2.complex
          • org.biopax.paxtools.model.level2.sequenceEntity
            • org.biopax.paxtools.model.level2.dna
            • org.biopax.paxtools.model.level2.protein
            • org.biopax.paxtools.model.level2.rna
          • org.biopax.paxtools.model.level2.smallMolecule
        • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
          • org.biopax.paxtools.model.level2.interaction
            • org.biopax.paxtools.model.level2.physicalInteraction
              • org.biopax.paxtools.model.level2.control
                • org.biopax.paxtools.model.level2.catalysis
                • org.biopax.paxtools.model.level2.modulation
              • org.biopax.paxtools.model.level2.conversion
                • org.biopax.paxtools.model.level2.biochemicalReaction
                  • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
                • org.biopax.paxtools.model.level2.complexAssembly
                • org.biopax.paxtools.model.level2.transport
                  • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
          • org.biopax.paxtools.model.level2.pathway
      • org.biopax.paxtools.model.level2.InteractionParticipant
        • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.Level2Element, org.biopax.paxtools.model.level2.XReferrable)
          • org.biopax.paxtools.model.level2.physicalEntity
            • org.biopax.paxtools.model.level2.complex
            • org.biopax.paxtools.model.level2.sequenceEntity
              • org.biopax.paxtools.model.level2.dna
              • org.biopax.paxtools.model.level2.protein
              • org.biopax.paxtools.model.level2.rna
            • org.biopax.paxtools.model.level2.smallMolecule
          • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
            • org.biopax.paxtools.model.level2.interaction
              • org.biopax.paxtools.model.level2.physicalInteraction
                • org.biopax.paxtools.model.level2.control
                  • org.biopax.paxtools.model.level2.catalysis
                  • org.biopax.paxtools.model.level2.modulation
                • org.biopax.paxtools.model.level2.conversion
                  • org.biopax.paxtools.model.level2.biochemicalReaction
                    • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
                  • org.biopax.paxtools.model.level2.complexAssembly
                  • org.biopax.paxtools.model.level2.transport
                    • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
            • org.biopax.paxtools.model.level2.pathway
        • org.biopax.paxtools.model.level2.physicalEntityParticipant (also extends org.biopax.paxtools.model.level2.utilityClass)
          • org.biopax.paxtools.model.level2.sequenceParticipant
      • org.biopax.paxtools.model.level2.pathwayComponent
        • org.biopax.paxtools.model.level2.pathwayStep (also extends org.biopax.paxtools.model.level2.utilityClass)
        • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.entity)
          • org.biopax.paxtools.model.level2.interaction
            • org.biopax.paxtools.model.level2.physicalInteraction
              • org.biopax.paxtools.model.level2.control
                • org.biopax.paxtools.model.level2.catalysis
                • org.biopax.paxtools.model.level2.modulation
              • org.biopax.paxtools.model.level2.conversion
                • org.biopax.paxtools.model.level2.biochemicalReaction
                  • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
                • org.biopax.paxtools.model.level2.complexAssembly
                • org.biopax.paxtools.model.level2.transport
                  • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
          • org.biopax.paxtools.model.level2.pathway
      • org.biopax.paxtools.model.level2.utilityClass
        • org.biopax.paxtools.model.level2.chemicalStructure
        • org.biopax.paxtools.model.level2.confidence (also extends org.biopax.paxtools.model.level2.XReferrable)
        • org.biopax.paxtools.model.level2.deltaGprimeO
        • org.biopax.paxtools.model.level2.evidence (also extends org.biopax.paxtools.model.level2.XReferrable)
        • org.biopax.paxtools.model.level2.experimentalForm
        • org.biopax.paxtools.model.level2.externalReferenceUtilityClass
          • org.biopax.paxtools.model.level2.bioSource
          • org.biopax.paxtools.model.level2.dataSource (also extends org.biopax.paxtools.model.level2.XReferrable)
          • org.biopax.paxtools.model.level2.openControlledVocabulary (also extends org.biopax.paxtools.model.level2.XReferrable)
          • org.biopax.paxtools.model.level2.xref
            • org.biopax.paxtools.model.level2.publicationXref
            • org.biopax.paxtools.model.level2.relationshipXref
            • org.biopax.paxtools.model.level2.unificationXref
        • org.biopax.paxtools.model.level2.kPrime
        • org.biopax.paxtools.model.level2.pathwayStep (also extends org.biopax.paxtools.model.level2.pathwayComponent)
        • org.biopax.paxtools.model.level2.physicalEntityParticipant (also extends org.biopax.paxtools.model.level2.InteractionParticipant)
          • org.biopax.paxtools.model.level2.sequenceParticipant
        • org.biopax.paxtools.model.level2.sequenceFeature (also extends org.biopax.paxtools.model.level2.XReferrable)
        • org.biopax.paxtools.model.level2.sequenceLocation
          • org.biopax.paxtools.model.level2.sequenceInterval
          • org.biopax.paxtools.model.level2.sequenceSite
      • org.biopax.paxtools.model.level2.XReferrable
        • org.biopax.paxtools.model.level2.confidence (also extends org.biopax.paxtools.model.level2.utilityClass)
        • org.biopax.paxtools.model.level2.dataSource (also extends org.biopax.paxtools.model.level2.externalReferenceUtilityClass)
        • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.InteractionParticipant, org.biopax.paxtools.model.level2.Level2Element)
          • org.biopax.paxtools.model.level2.physicalEntity
            • org.biopax.paxtools.model.level2.complex
            • org.biopax.paxtools.model.level2.sequenceEntity
              • org.biopax.paxtools.model.level2.dna
              • org.biopax.paxtools.model.level2.protein
              • org.biopax.paxtools.model.level2.rna
            • org.biopax.paxtools.model.level2.smallMolecule
          • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
            • org.biopax.paxtools.model.level2.interaction
              • org.biopax.paxtools.model.level2.physicalInteraction
                • org.biopax.paxtools.model.level2.control
                  • org.biopax.paxtools.model.level2.catalysis
                  • org.biopax.paxtools.model.level2.modulation
                • org.biopax.paxtools.model.level2.conversion
                  • org.biopax.paxtools.model.level2.biochemicalReaction
                    • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
                  • org.biopax.paxtools.model.level2.complexAssembly
                  • org.biopax.paxtools.model.level2.transport
                    • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
            • org.biopax.paxtools.model.level2.pathway
        • org.biopax.paxtools.model.level2.evidence (also extends org.biopax.paxtools.model.level2.utilityClass)
        • org.biopax.paxtools.model.level2.openControlledVocabulary (also extends org.biopax.paxtools.model.level2.externalReferenceUtilityClass)
        • org.biopax.paxtools.model.level2.sequenceFeature (also extends org.biopax.paxtools.model.level2.utilityClass)
• java.io.Serializable
  • org.biopax.paxtools.model.BioPAXElement (also extends java.lang.Cloneable)
    • org.biopax.paxtools.model.level2.Level2Element
      • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.InteractionParticipant, org.biopax.paxtools.model.level2.XReferrable)
        • org.biopax.paxtools.model.level2.physicalEntity
          • org.biopax.paxtools.model.level2.complex
          • org.biopax.paxtools.model.level2.sequenceEntity
            • org.biopax.paxtools.model.level2.dna
            • org.biopax.paxtools.model.level2.protein
            • org.biopax.paxtools.model.level2.rna
          • org.biopax.paxtools.model.level2.smallMolecule
        • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
          • org.biopax.paxtools.model.level2.interaction
            • org.biopax.paxtools.model.level2.physicalInteraction
              • org.biopax.paxtools.model.level2.control
                • org.biopax.paxtools.model.level2.catalysis
                • org.biopax.paxtools.model.level2.modulation
              • org.biopax.paxtools.model.level2.conversion
                • org.biopax.paxtools.model.level2.biochemicalReaction
                  • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
                • org.biopax.paxtools.model.level2.complexAssembly
                • org.biopax.paxtools.model.level2.transport
                  • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
          • org.biopax.paxtools.model.level2.pathway
      • org.biopax.paxtools.model.level2.InteractionParticipant
        • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.Level2Element, org.biopax.paxtools.model.level2.XReferrable)
          • org.biopax.paxtools.model.level2.physicalEntity
            • org.biopax.paxtools.model.level2.complex
            • org.biopax.paxtools.model.level2.sequenceEntity
              • org.biopax.paxtools.model.level2.dna
              • org.biopax.paxtools.model.level2.protein
              • org.biopax.paxtools.model.level2.rna
            • org.biopax.paxtools.model.level2.smallMolecule
          • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
            • org.biopax.paxtools.model.level2.interaction
              • org.biopax.paxtools.model.level2.physicalInteraction
                • org.biopax.paxtools.model.level2.control
                  • org.biopax.paxtools.model.level2.catalysis
                  • org.biopax.paxtools.model.level2.modulation
                • org.biopax.paxtools.model.level2.conversion
                  • org.biopax.paxtools.model.level2.biochemicalReaction
                    • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
                  • org.biopax.paxtools.model.level2.complexAssembly
                  • org.biopax.paxtools.model.level2.transport
                    • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
            • org.biopax.paxtools.model.level2.pathway
        • org.biopax.paxtools.model.level2.physicalEntityParticipant (also extends org.biopax.paxtools.model.level2.utilityClass)
          • org.biopax.paxtools.model.level2.sequenceParticipant
      • org.biopax.paxtools.model.level2.pathwayComponent
        • org.biopax.paxtools.model.level2.pathwayStep (also extends org.biopax.paxtools.model.level2.utilityClass)
        • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.entity)
          • org.biopax.paxtools.model.level2.interaction
            • org.biopax.paxtools.model.level2.physicalInteraction
              • org.biopax.paxtools.model.level2.control
                • org.biopax.paxtools.model.level2.catalysis
                • org.biopax.paxtools.model.level2.modulation
              • org.biopax.paxtools.model.level2.conversion
                • org.biopax.paxtools.model.level2.biochemicalReaction
                  • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
                • org.biopax.paxtools.model.level2.complexAssembly
                • org.biopax.paxtools.model.level2.transport
                  • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
          • org.biopax.paxtools.model.level2.pathway
      • org.biopax.paxtools.model.level2.utilityClass
        • org.biopax.paxtools.model.level2.chemicalStructure
        • org.biopax.paxtools.model.level2.confidence (also extends org.biopax.paxtools.model.level2.XReferrable)
        • org.biopax.paxtools.model.level2.deltaGprimeO
        • org.biopax.paxtools.model.level2.evidence (also extends org.biopax.paxtools.model.level2.XReferrable)
        • org.biopax.paxtools.model.level2.experimentalForm
        • org.biopax.paxtools.model.level2.externalReferenceUtilityClass
          • org.biopax.paxtools.model.level2.bioSource
          • org.biopax.paxtools.model.level2.dataSource (also extends org.biopax.paxtools.model.level2.XReferrable)
          • org.biopax.paxtools.model.level2.openControlledVocabulary (also extends org.biopax.paxtools.model.level2.XReferrable)
          • org.biopax.paxtools.model.level2.xref
            • org.biopax.paxtools.model.level2.publicationXref
            • org.biopax.paxtools.model.level2.relationshipXref
            • org.biopax.paxtools.model.level2.unificationXref
        • org.biopax.paxtools.model.level2.kPrime
        • org.biopax.paxtools.model.level2.pathwayStep (also extends org.biopax.paxtools.model.level2.pathwayComponent)
        • org.biopax.paxtools.model.level2.physicalEntityParticipant (also extends org.biopax.paxtools.model.level2.InteractionParticipant)
          • org.biopax.paxtools.model.level2.sequenceParticipant
        • org.biopax.paxtools.model.level2.sequenceFeature (also extends org.biopax.paxtools.model.level2.XReferrable)
        • org.biopax.paxtools.model.level2.sequenceLocation
          • org.biopax.paxtools.model.level2.sequenceInterval
          • org.biopax.paxtools.model.level2.sequenceSite
      • org.biopax.paxtools.model.level2.XReferrable
        • org.biopax.paxtools.model.level2.confidence (also extends org.biopax.paxtools.model.level2.utilityClass)
        • org.biopax.paxtools.model.level2.dataSource (also extends org.biopax.paxtools.model.level2.externalReferenceUtilityClass)
        • org.biopax.paxtools.model.level2.entity (also extends org.biopax.paxtools.model.level2.InteractionParticipant, org.biopax.paxtools.model.level2.Level2Element)
          • org.biopax.paxtools.model.level2.physicalEntity
            • org.biopax.paxtools.model.level2.complex
            • org.biopax.paxtools.model.level2.sequenceEntity
              • org.biopax.paxtools.model.level2.dna
              • org.biopax.paxtools.model.level2.protein
              • org.biopax.paxtools.model.level2.rna
            • org.biopax.paxtools.model.level2.smallMolecule
          • org.biopax.paxtools.model.level2.process (also extends org.biopax.paxtools.model.level2.pathwayComponent)
            • org.biopax.paxtools.model.level2.interaction
              • org.biopax.paxtools.model.level2.physicalInteraction
                • org.biopax.paxtools.model.level2.control
                  • org.biopax.paxtools.model.level2.catalysis
                  • org.biopax.paxtools.model.level2.modulation
                • org.biopax.paxtools.model.level2.conversion
                  • org.biopax.paxtools.model.level2.biochemicalReaction
                    • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.transport)
                  • org.biopax.paxtools.model.level2.complexAssembly
                  • org.biopax.paxtools.model.level2.transport
                    • org.biopax.paxtools.model.level2.transportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level2.biochemicalReaction)
            • org.biopax.paxtools.model.level2.pathway
        • org.biopax.paxtools.model.level2.evidence (also extends org.biopax.paxtools.model.level2.utilityClass)
        • org.biopax.paxtools.model.level2.openControlledVocabulary (also extends org.biopax.paxtools.model.level2.externalReferenceUtilityClass)
        • org.biopax.paxtools.model.level2.sequenceFeature (also extends org.biopax.paxtools.model.level2.utilityClass)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biopax.paxtools.model.level2.SpontaneousType
    • org.biopax.paxtools.model.level2.PositionStatusType
    • org.biopax.paxtools.model.level2.Direction
    • org.biopax.paxtools.model.level2.ControlType