|
||||||||||
| PREV NEXT | FRAMES NO FRAMES | |||||||||
| Packages that use org.biopax.paxtools.model.level2 | |
|---|---|
| org.biopax.paxtools.controller | |
| org.biopax.paxtools.model.level2 | |
| org.biopax.paxtools.util | |
| Classes in org.biopax.paxtools.model.level2 used by org.biopax.paxtools.controller | |
|---|---|
| conversion
|
|
| physicalEntityParticipant
|
|
| Classes in org.biopax.paxtools.model.level2 used by org.biopax.paxtools.model.level2 | |
|---|---|
| biochemicalReaction
A conversion interaction in which one or more entities (substrates) undergo ovalent changes to become one or more other entities (products). |
|
| bioSource
The biological source of an entity (e.g. |
|
| chemicalStructure
Describes a small molecule structure. |
|
| complex
A physical entity whose structure is comprised of other physical entities bound to each other non-covalently, at least one of which is a macromolecule (e.g. |
|
| confidence
Confidence that the containing instance actually occurs or exists in vivo, usually a statistical measure. |
|
| control
|
|
| ControlType
User: root Date: Aug 1, 2006 Time: 5:37:34 PM_DOT |
|
| conversion
|
|
| dataSource
XREF Should be only unification and publication xrefs |
|
| deltaGprimeO
|
|
| Direction
Catalysis direction controlled vocabulary |
|
| entity
This class represents a discrete biological unit used when describing pathways. |
|
| evidence
|
|
| experimentalForm
|
|
| externalReferenceUtilityClass
|
|
| interaction
|
|
| InteractionParticipant
marker interface for entities and PEPs |
|
| kPrime
|
|
| Level2Element
Created by IntelliJ IDEA. |
|
| openControlledVocabulary
|
|
| pathway
|
|
| pathwayComponent
Interface for pathway steps and processes |
|
| pathwayStep
This represents a set of pathway events. |
|
| physicalEntity
|
|
| physicalEntityParticipant
|
|
| physicalInteraction
|
|
| PositionStatusType
|
|
| process
Tagging interface for entities that needs evidence and can be targeted by a control : Pathway and Interaction |
|
| publicationXref
|
|
| relationshipXref
|
|
| sequenceEntity
User: root Date: Aug 7, 2006 Time: 4:51:19 PM_DOT |
|
| sequenceFeature
|
|
| sequenceLocation
|
|
| sequenceSite
|
|
| SpontaneousType
|
|
| transport
|
|
| unificationXref
|
|
| utilityClass
|
|
| xref
|
|
| XReferrable
|
|
| Classes in org.biopax.paxtools.model.level2 used by org.biopax.paxtools.util | |
|---|---|
| complex
A physical entity whose structure is comprised of other physical entities bound to each other non-covalently, at least one of which is a macromolecule (e.g. |
|
| control
|
|
| conversion
|
|
| physicalEntity
|
|
| physicalEntityParticipant
|
|
|
||||||||||
| PREV NEXT | FRAMES NO FRAMES | |||||||||