org.biopax.paxtools.model.level2
Interface physicalEntity

All Superinterfaces:

BioPAXElement, java.lang.Cloneable, entity, InteractionParticipant, Level2Element, java.io.Serializable, XReferrable

All Known Subinterfaces:

complex, dna, protein, rna, sequenceEntity, smallMolecule

public interface physicalEntity
extends entity

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

void	addPHYSICAL_ENTITYof(physicalEntityParticipant pep)
java.util.Set<interaction>	getAllInteractions()
<T extends interaction> java.util.Set<T>	getAllInteractions(java.lang.Class<T> ofType)
java.util.Set<physicalEntityParticipant>	isPHYSICAL_ENTITYof()
void	removePHYSICAL_ENTITYof(physicalEntityParticipant pep)

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, findCommonPublications, findCommonRelationships, findCommonUnifications, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element

addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Method Detail

isPHYSICAL_ENTITYof

java.util.Set<physicalEntityParticipant> isPHYSICAL_ENTITYof()

getAllInteractions

java.util.Set<interaction> getAllInteractions()

getAllInteractions

<T extends interaction> java.util.Set<T> getAllInteractions(java.lang.Class<T> ofType)

addPHYSICAL_ENTITYof

void addPHYSICAL_ENTITYof(physicalEntityParticipant pep)

removePHYSICAL_ENTITYof

void removePHYSICAL_ENTITYof(physicalEntityParticipant pep)