org.biopax.paxtools.model.level2
Interface process

All Superinterfaces:

BioPAXElement, java.lang.Cloneable, entity, InteractionParticipant, Level2Element, pathwayComponent, java.io.Serializable, XReferrable

All Known Subinterfaces:

biochemicalReaction, catalysis, complexAssembly, control, conversion, interaction, modulation, pathway, physicalInteraction, transport, transportWithBiochemicalReaction

public interface process
extends entity, pathwayComponent

Tagging interface for entities that needs evidence and can be targeted by a control : Pathway and Interaction

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

void	addEVIDENCE(evidence EVIDENCE) This method adds the given evidence to this process.
java.util.Set<evidence>	getEVIDENCE()
java.util.Set<control>	isCONTROLLEDOf()
java.util.Set<pathway>	isPATHWAY_COMPONENTSof()
java.util.Set<pathwayStep>	isSTEP_INTERACTIONSOf()
void	removeEVIDENCE(evidence EVIDENCE) This method remmoves the given evidence from this process.
void	setEVIDENCE(java.util.Set<evidence> EVIDENCE)

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, findCommonPublications, findCommonRelationships, findCommonUnifications, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element

addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Method Detail

addEVIDENCE

void addEVIDENCE(evidence EVIDENCE)

This method adds the given evidence to this process.

Parameters:

EVIDENCE -

removeEVIDENCE

void removeEVIDENCE(evidence EVIDENCE)

This method remmoves the given evidence from this process. If process does not already contain this evidence this method does nothing

Parameters:

EVIDENCE -

getEVIDENCE

java.util.Set<evidence> getEVIDENCE()

Returns:

setEVIDENCE

void setEVIDENCE(java.util.Set<evidence> EVIDENCE)

isCONTROLLEDOf

java.util.Set<control> isCONTROLLEDOf()

isPATHWAY_COMPONENTSof

java.util.Set<pathway> isPATHWAY_COMPONENTSof()

Specified by:

isPATHWAY_COMPONENTSof in interface pathwayComponent

isSTEP_INTERACTIONSOf

java.util.Set<pathwayStep> isSTEP_INTERACTIONSOf()