org.biopax.paxtools.model.level3
Interface NucleicAcidReference

All Superinterfaces:

BioPAXElement, java.lang.Cloneable, EntityReference, Level3Element, Named, Observable, SequenceEntityReference, java.io.Serializable, UtilityClass, XReferrable

All Known Subinterfaces:

DnaReference, DnaRegionReference, NucleicAcidRegionReference, RnaReference, RnaRegionReference

All Known Implementing Classes:

DnaReferenceImpl, DnaRegionReferenceImpl, NucleicAcidReferenceImpl, NucleicAcidRegionReferenceImpl, RnaReferenceImpl, RnaRegionReferenceImpl

public interface NucleicAcidReference
extends SequenceEntityReference

Role interface for NucleicAcidReferences, namely DNA and RNA. They share the common behaviour of having "regions" on them.

See Also:

NucleicAcidRegionReference

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

void	addSubRegion(NucleicAcidRegionReference regionReference)
java.util.Set<NucleicAcidRegionReference>	getSubRegion()
void	removeSubRegion(NucleicAcidRegionReference regionReference)

Methods inherited from interface org.biopax.paxtools.model.level3.SequenceEntityReference

getOrganism, getSequence, setOrganism, setSequence

Methods inherited from interface org.biopax.paxtools.model.level3.EntityReference

addEntityFeature, addEntityReferenceType, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeMemberEntityReference

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Method Detail

getSubRegion

java.util.Set<NucleicAcidRegionReference> getSubRegion()

addSubRegion

void addSubRegion(NucleicAcidRegionReference regionReference)

removeSubRegion

void removeSubRegion(NucleicAcidRegionReference regionReference)