org.biopax.paxtools.model.level3
Interface NucleicAcidRegionReference

All Superinterfaces:

BioPAXElement, java.lang.Cloneable, EntityReference, Level3Element, Named, NucleicAcidReference, Observable, SequenceEntityReference, java.io.Serializable, UtilityClass, XReferrable

All Known Subinterfaces:

DnaRegionReference, RnaRegionReference

All Known Implementing Classes:

DnaRegionReferenceImpl, NucleicAcidRegionReferenceImpl, RnaRegionReferenceImpl

public interface NucleicAcidRegionReference
extends NucleicAcidReference

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

void	addRegionType(SequenceRegionVocabulary regionType)
SequenceLocation	getAbsoluteRegion()
NucleicAcidReference	getContainerEntityReference()
java.util.Set<SequenceRegionVocabulary>	getRegionType()
java.util.Set<NucleicAcidReference>	getSubRegionOf()
void	removeRegionType(SequenceRegionVocabulary regionType)
void	setAbsoluteRegion(SequenceLocation absoluteRegion)
void	setContainerEntityReference(NucleicAcidReference containerEntityReference)

Methods inherited from interface org.biopax.paxtools.model.level3.NucleicAcidReference

addSubRegion, getSubRegion, removeSubRegion

Methods inherited from interface org.biopax.paxtools.model.level3.SequenceEntityReference

getOrganism, getSequence, setOrganism, setSequence

Methods inherited from interface org.biopax.paxtools.model.level3.EntityReference

addEntityFeature, addEntityReferenceType, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeMemberEntityReference

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Method Detail

getSubRegionOf

java.util.Set<NucleicAcidReference> getSubRegionOf()

getAbsoluteRegion

SequenceLocation getAbsoluteRegion()

setAbsoluteRegion

void setAbsoluteRegion(SequenceLocation absoluteRegion)

getRegionType

java.util.Set<SequenceRegionVocabulary> getRegionType()

addRegionType

void addRegionType(SequenceRegionVocabulary regionType)

removeRegionType

void removeRegionType(SequenceRegionVocabulary regionType)

getContainerEntityReference

NucleicAcidReference getContainerEntityReference()

setContainerEntityReference

void setContainerEntityReference(NucleicAcidReference containerEntityReference)