org.biopax.paxtools.model.level3
Interface Score

All Superinterfaces:

BioPAXElement, java.lang.Cloneable, Level3Element, java.io.Serializable, UtilityClass, XReferrable

All Known Implementing Classes:

ScoreImpl

public interface Score
extends UtilityClass, XReferrable

Definition: A score associated with a publication reference describing how the score was determined, the name of the method and a comment briefly describing the method.

Usage: The xref must contain at least one publication that describes the method used to determine the score value. There is currently no standard way of describing values, so any string is valid.

Examples: The statistical significance of a result, e.g. "p<0.05".

Nested Class Summary

Nested classes/interfaces inherited from interface org.biopax.paxtools.model.BioPAXElement

BioPAXElement.Key

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

Provenance	getScoreSource() This property defines the source of the scoring methodology.
java.lang.String	getValue() This property defines the value of the score.
void	setScoreSource(Provenance scoreSource) This property defines the source of the scoring methodology.
void	setValue(java.lang.String value) This property defines the value of the score.

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Method Detail

getValue

java.lang.String getValue()

This property defines the value of the score. This can be a numerical or categorical value.

Returns:

Numerical or categorical value of the score

setValue

void setValue(java.lang.String value)

This property defines the value of the score. This can be a numerical or categorical value.

Parameters:

value - Numerical or categorical value of the score

getScoreSource

Provenance getScoreSource()

This property defines the source of the scoring methodology.

Returns:

A publication or web site describing the scoring methodology and the range of values.

setScoreSource

void setScoreSource(Provenance scoreSource)

This property defines the source of the scoring methodology.

Parameters:

scoreSource - publication or web site describing the scoring methodology and the range of values.