Uses of Interface
org.biopax.paxtools.model.level3.SimplePhysicalEntity

Packages that use SimplePhysicalEntity

org.biopax.paxtools.impl.level3
org.biopax.paxtools.model.level3

Uses of SimplePhysicalEntity in org.biopax.paxtools.impl.level3

Classes in org.biopax.paxtools.impl.level3 that implement SimplePhysicalEntity

class	DnaImpl
class	DnaRegionImpl
class	NucleicAcidImpl
class	ProteinImpl
class	RnaImpl
class	RnaRegionImpl
class	SimplePhysicalEntityImpl
class	SmallMoleculeImpl

Methods in org.biopax.paxtools.impl.level3 that return types with arguments of type SimplePhysicalEntity

java.util.Set<SimplePhysicalEntity>	EntityReferenceImpl.getEntityReferenceOf()
java.util.Set<SimplePhysicalEntity>	ComplexImpl.getSimpleMembers()
protected java.util.Set<SimplePhysicalEntity>	ComplexImpl.getSimpleMembers(java.util.Set<SimplePhysicalEntity> set)

Method parameters in org.biopax.paxtools.impl.level3 with type arguments of type SimplePhysicalEntity

protected java.util.Set<SimplePhysicalEntity>	ComplexImpl.getSimpleMembers(java.util.Set<SimplePhysicalEntity> set)
protected void	EntityReferenceImpl.setEntityReferenceOf(java.util.Set<SimplePhysicalEntity> entityReferenceOf)

Uses of SimplePhysicalEntity in org.biopax.paxtools.model.level3

Subinterfaces of SimplePhysicalEntity in org.biopax.paxtools.model.level3

interface	Dna Definition: A physical entity consisting of a sequence of deoxyribonucleotide monophosphates; a deoxyribonucleic acid.
interface	DnaRegion Definition: A region on a DNA molecule.
interface	NucleicAcid Tagger interface for DNA and RNA
interface	Protein
interface	Rna
interface	RnaRegion Definition: A region on a RNA molecule.
interface	SmallMolecule

Methods in org.biopax.paxtools.model.level3 that return types with arguments of type SimplePhysicalEntity

java.util.Set<SimplePhysicalEntity>	EntityReference.getEntityReferenceOf() Inverse of getEntityReference()
java.util.Set<SimplePhysicalEntity>	Complex.getSimpleMembers() Gets the member physical entities which are not complex.