org.mskcc.psibiopax.converter
Class BioPAXMarshallerImp

java.lang.Object
  java.lang.Thread
      org.mskcc.psibiopax.converter.BioPAXMarshallerImp

All Implemented Interfaces:

java.lang.Runnable, BioPAXMarshaller

public class BioPAXMarshallerImp
extends java.lang.Thread
implements BioPAXMarshaller

This class waits for each EntryProcessor thread to finish. After thread(s) completion, combines set of Paxerve Models into single Model for marshalling.

Author:

Benjamin Gross

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

BioPAXMarshallerImp(PSIMIBioPAXConverter converter, BioPAXLevel bpLevel, java.io.OutputStream outputStream, int numEntries)

Method Summary

void	addModel(Model bpModel) Our implementation of BioPAXMarshaller interface.
void	run() Our implementation of run.

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BioPAXMarshallerImp

public BioPAXMarshallerImp(PSIMIBioPAXConverter converter,
                           BioPAXLevel bpLevel,
                           java.io.OutputStream outputStream,
                           int numEntries)

Method Detail

addModel

public void addModel(Model bpModel)

Our implementation of BioPAXMarshaller interface.

Specified by:

addModel in interface BioPAXMarshaller

Parameters:

bpModel - Model

run

public void run()

Our implementation of run.

Specified by:

run in interface java.lang.Runnable

Overrides:

run in class java.lang.Thread