Due to Sourceforge Hosted Apps retirement, we are moving BioPAX wiki, and further edits will not be saved. We also consider using the BioPAX.org site, forum, Google Docs, and issue tracker instead of wiki for all ongoing and future BioPAX discussions and documents.

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BioPAX : Biological Pathways Exchange

BioPAX is a standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Specifically, BioPAX supports data exchange between pathway data groups and thus reduces the complexity of interchange between data formats by providing an accepted standard format for pathway data. It is an open and collaborative effort by the community of researchers, software developers, and institutions. BioPAX is defined in OWL DL and is represented in the RDF/XML format. BioPAX Paper was published in Nature Biotechnology in 2010.

Coordination

For biologists

and computational biologists interested in downloading and analyzing pathway data:

For developers

interested in building software using BioPAX:

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