Difference between revisions of "Main Page"

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***[http://www.biopax.org/release/biopax-level1.owl Level 1 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level1 browse]) Supports metabolic pathways
 
***[http://www.biopax.org/release/biopax-level1.owl Level 1 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level1 browse]) Supports metabolic pathways
 
** <b>[[Data|Pathways in BioPAX format]]</b>
 
** <b>[[Data|Pathways in BioPAX format]]</b>
***[http://biocyc.org/download.shtml BioCyc] - For freely available datasets visit http://biocyc.org/open-reg.shtml. For full dataset (free to academics, fees apply to industry), visit http://biocyc.org/flat-file-reg.shtml .  You can get the entire set of organisms in one file (named biopax.owl) or each individually (each one also named biopax.owl.
 
***[http://reactome.org Reactome] - Level 2 and Level 3 format:  Download link available on each pathway page or [http://reactome.org/download/index.html on the Reactome download page].
 
***[http://www.ebi.ac.uk/biomodels/ BioModels Database] - Level 2 format: Download link available on each model page.
 
***[http://www.inoh.org/ INOH pathway database] - Level 2 format: 57 signal transduction pathways with more than 1300 interactions are available from [http://www.inoh.org/download.html#PathwayData Pathway data page].
 
***[http://nashua.cwru.edu/PathwaysWeb/ PathCase] - save pathways and search results in BioPAX
 
***[http://pid.nci.nih.gov/PID/browse_pathways.shtml Pathway Interaction Database] - some pathways curated by NCI-Nature and many others imported from [[BioCarta]]
 
***[http://www.signaling-gateway.org/molecule/ UCSD Nature Molecule Pages]- Level 3 format: Download link available on each molecule page.
 
 
**<b>[[Biological software supporting BioPAX]]</b>
 
**<b>[[Biological software supporting BioPAX]]</b>
 
*<b>For developers interested in building software using BioPAX</b>
 
*<b>For developers interested in building software using BioPAX</b>

Revision as of 22:51, 31 March 2013

BioPAX : Biological Pathways Exchange

BioPAX is a collaborative effort to create a data exchange format for biological pathway data. BioPAX activity is now mostly documented on this wiki and BioPAX Forum.

BioPAX Workgroup Coordination

Using BioPAX

Note

Old BioPAX (MoinMoin) wiki was auto-converted to this MediaWiki. We encourage everyone to simply pick a Random Page to review and edit.