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(BioPAX : Biological Pathways Exchange)
(Using BioPAX)
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== Using BioPAX ==
 
== Using BioPAX ==
*<b>For biologists and computational biologists interested in downloading and analyzing pathway data</b>
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*<strong>For biologists and computational biologists interested in downloading and analyzing pathway data</strong>
**<b>[[Specification]]</b>: The BioPAX format is defined in [http://www.w3.org/TR/owl-features/ OWL] and is represented in the RDF/XML Syntax).
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** [http://www.biopax.org/release/biopax-level3.owl Level 3 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level3/ browse]) covers metabolic pathways, molecular interactions, signaling pathways (including molecular states and generics), gene regulation and genetic interactions.
*** [http://www.biopax.org/release/biopax-level3.owl Level 3 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level3/ browse]) covers metabolic pathways, molecular interactions, signaling pathways (including molecular states and generics), gene regulation and genetic interactions.
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**[http://www.biopax.org/release/biopax-level2.owl Level 2 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level2 browse]) Support metabolic pathways, molecular interactions, protein post-translational modifications and the [http://psidev.sourceforge.net/ PSI-MI]
***[http://www.biopax.org/release/biopax-level2.owl Level 2 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level2 browse]) Support metabolic pathways, molecular interactions, protein post-translational modifications and the [http://psidev.sourceforge.net/ PSI-MI]
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**[http://www.biopax.org/release/biopax-level1.owl Level 1 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level1 browse]) Supports metabolic pathways
***[http://www.biopax.org/release/biopax-level1.owl Level 1 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level1 browse]) Supports metabolic pathways
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**[[Data|Pathways in BioPAX format]]
** <b>[[Data|Pathways in BioPAX format]]</b>
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**[[Biological software supporting BioPAX]]
**<b>[[Biological software supporting BioPAX]]</b>
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*<strong>For developers interested in building software using BioPAX</strong>
*<b>For developers interested in building software using BioPAX</b>
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**[[Paxtools]]
 
**[[Paxtools]]
 
**[http://www.medicalcomputing.net/owl1.html Introduction to OWL Web Ontology Language for Medical and Biosciences Applications]
 
**[http://www.medicalcomputing.net/owl1.html Introduction to OWL Web Ontology Language for Medical and Biosciences Applications]

Revision as of 00:15, 1 April 2013

BioPAX : Biological Pathways Exchange

BioPAX is a standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Specifically, BioPAX supports data exchange between pathway data groups and thus reduces the complexity of interchange between data formats by providing an accepted standard format for pathway data. It is open and collaborative effort by the community of researchers, software developers, and institutions.

BioPAX Workgroup Coordination

Using BioPAX

Note

Old BioPAX (MoinMoin) wiki was auto-converted to this MediaWiki. We encourage everyone to simply pick a Random Page to review and edit.