Difference between revisions of "Main Page"

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== Using BioPAX ==
 
== Using BioPAX ==
 
*<strong>For biologists and computational biologists interested in downloading and analyzing pathway data</strong>
 
*<strong>For biologists and computational biologists interested in downloading and analyzing pathway data</strong>
** [http://www.biopax.org/release/biopax-level3.owl Level 3 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level3/ browse]) covers metabolic pathways, molecular interactions, signaling pathways (including molecular states and generics), gene regulation and genetic interactions.
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** [http://www.biopax.org/release/biopax-level3.owl Level 3 Ontology] ([http://www.biopax.org/owldoc/Level3/ browse]) covers metabolic pathways, molecular interactions, signaling pathways (including molecular states and generics), gene regulation and genetic interactions.
**[http://www.biopax.org/release/biopax-level2.owl Level 2 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level2 browse]) Support metabolic pathways, molecular interactions, protein post-translational modifications and the [http://psidev.sourceforge.net/ PSI-MI]
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**[http://www.biopax.org/release/biopax-level2.owl Level 2 Ontology] ([http://www.biopax.org/owldoc/Level2 browse]) Support metabolic pathways, molecular interactions, protein post-translational modifications and the [http://psidev.sourceforge.net/ PSI-MI]
**[http://www.biopax.org/release/biopax-level1.owl Level 1 Ontology] ([http://biopax.sourceforge.net/biopax-site/owldoc/Level1 browse]) Supports metabolic pathways
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**[http://www.biopax.org/release/biopax-level1.owl Level 1 Ontology] ([http://www.biopax.org/owldoc/Level1 browse]) Supports metabolic pathways
 
**[[Data|Pathways in BioPAX format]]
 
**[[Data|Pathways in BioPAX format]]
 
**[[Biological software supporting BioPAX]]
 
**[[Biological software supporting BioPAX]]

Revision as of 18:24, 5 April 2013

BioPAX : Biological Pathways Exchange

BioPAX is a standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Specifically, BioPAX supports data exchange between pathway data groups and thus reduces the complexity of interchange between data formats by providing an accepted standard format for pathway data. It is an open and collaborative effort by the community of researchers, software developers, and institutions. BioPAX is defined in OWL DL and is represented in the RDF/XML format. BioPAX Paper was published in Nature Biotechnology in 2010.

Coordination

Using BioPAX

Note

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