Difference between revisions of "Specification"

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(BioPAX Development Logs)
(Level3: updated URLs)
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** [http://www.mygrid.org.uk/OWL/Presentation?url=http://www.biopax.org/release/biopax-level3.owl OWL ontology HTML presentation view]
 
** [http://www.mygrid.org.uk/OWL/Presentation?url=http://www.biopax.org/release/biopax-level3.owl OWL ontology HTML presentation view]
 
** [http://www.biopax.org/webprotege/ WebProtégé view]
 
** [http://www.biopax.org/webprotege/ WebProtégé view]
* [http://sourceforge.net/apps/mediawiki/biopax/index.php?title=L3Data BioPAX Level 3 Data Sources]
+
* [L3Data BioPAX Level 3 Data Sources]
* Developer resources
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* [http://sourceforge.net/p/biopax/code/ current BioPAX ontology and examples (Mercurial SCM)]
** [http://biopax.hg.sourceforge.net/hgweb/biopax the latest BioPAX sources (Mercurial SCM)] - browse the Hg repository from the root (all BioPAX Levels)
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** [http://biopax.hg.sourceforge.net/hgweb/biopax/biopax/file/default/Level3/ BioPAX L3 docs and examples]
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** [http://biopax.hg.sourceforge.net/hgweb/biopax/biopax/raw-file/default/Level3/specification/biopax-level3.owl the latest rev. of BioPAX Level 3 ontology]
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** [http://biopax.hg.sourceforge.net/hgweb/biopax/biopax/log/default/Level3/specification/biopax-level3.owl BioPAX Level 3 OWL revision history]
+
  
 
=== Posters ===
 
=== Posters ===
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*[http://www.biopax.org/Documentation/Level3updateWorkshopNov2009.ppt Level 3 Presentation NOV2009 ]
 
*[http://www.biopax.org/Documentation/Level3updateWorkshopNov2009.ppt Level 3 Presentation NOV2009 ]
 
*[http://www.biopax.org/Documentation/BioPAXTutorialNov2009.pdf BioPAX Tutorial NOV 2009 ]
 
*[http://www.biopax.org/Documentation/BioPAXTutorialNov2009.pdf BioPAX Tutorial NOV 2009 ]
*%TODO add more...
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*%TODO add more... (HARMONY'11, COMBINE'12, HARMONY'12, HARMONY'13, etc...)
  
 
=== Publications ===
 
=== Publications ===
 
*The BioPAX community standard for pathway data sharing. [http://www.nature.com/nbt/journal/v28/n9/full/nbt.1666.html Nature Biotechnology 28, 935–942 (2010)]
 
*The BioPAX community standard for pathway data sharing. [http://www.nature.com/nbt/journal/v28/n9/full/nbt.1666.html Nature Biotechnology 28, 935–942 (2010)]
 
=== BioPAX Development Logs ===
 
* [http://biopax.hg.sourceforge.net/hgweb/biopax/biopax/rss-log BioPAX Specification Changelog (RSS)]
 
* [http://biopax.hg.sourceforge.net/hgweb/biopax/paxtools/rss-log Paxtools Changelog (RSS)]
 
* [http://biopax.hg.sourceforge.net/hgweb/biopax/validator/rss-log BioPAX Validator Changelog (RSS)]
 
  
 
==Level2==
 
==Level2==

Revision as of 22:28, 27 March 2013

Specification

This pages provides links to the BioPAX specifications and documentation. The latest version is BioPAX Level 3, and it is recommended that users adopt or migrate to this version.

(See other wiki pages in the Category:LEVEL3.)

Level3

Posters

Presentations

Publications

Level2

Level1