Difference between revisions of "Specification"

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m (Specification)
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(See other wiki pages in the [http://sourceforge.net/apps/mediawiki/biopax/index.php?title=Category:LEVEL3 Category:LEVEL3].)
 
(See other wiki pages in the [http://sourceforge.net/apps/mediawiki/biopax/index.php?title=Category:LEVEL3 Category:LEVEL3].)
  
==Level3==
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==BioPAX Level3==
 
* Supports metabolic pathways, signaling pathways (including states of molecules and generic molecules), gene regulatory networks, molecular interactions, genetic interactions. Not backwards compatible with Level 2.
 
* Supports metabolic pathways, signaling pathways (including states of molecules and generic molecules), gene regulatory networks, molecular interactions, genetic interactions. Not backwards compatible with Level 2.
 
* [http://www.biopax.org/release/biopax-level3-documentation.pdf Official BioPAX Level 3 Documentation] - Status: Final, Release v1.0 July 2010
 
* [http://www.biopax.org/release/biopax-level3-documentation.pdf Official BioPAX Level 3 Documentation] - Status: Final, Release v1.0 July 2010
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*The BioPAX community standard for pathway data sharing. [http://www.nature.com/nbt/journal/v28/n9/full/nbt.1666.html Nature Biotechnology 28, 935–942 (2010)]
 
*The BioPAX community standard for pathway data sharing. [http://www.nature.com/nbt/journal/v28/n9/full/nbt.1666.html Nature Biotechnology 28, 935–942 (2010)]
  
==Level2==
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==BioPAX Level2==
 
* Supports metabolic pathways, signaling pathways, molecular interactions. Backwards compatible with Level 1.
 
* Supports metabolic pathways, signaling pathways, molecular interactions. Backwards compatible with Level 1.
 
* [http://www.biopax.org/release/biopax-level2.owl Official BioPAX Level 2 OWL file] - Status: Final. Recommend using Level 3.
 
* [http://www.biopax.org/release/biopax-level2.owl Official BioPAX Level 2 OWL file] - Status: Final. Recommend using Level 3.
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** [http://www.mygrid.org.uk/OWL/Presentation?url=http://www.biopax.org/release/biopax-level2.owl Auto-generated ontology documentation]
 
** [http://www.mygrid.org.uk/OWL/Presentation?url=http://www.biopax.org/release/biopax-level2.owl Auto-generated ontology documentation]
  
==Level1==
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==BioPAX Level1==
 
* Supports metabolic pathways.
 
* Supports metabolic pathways.
 
* [http://www.biopax.org/release/biopax-level1.owl Official BioPAX Level 1 OWL file] - Status: Final. Recommend using Level 3.
 
* [http://www.biopax.org/release/biopax-level1.owl Official BioPAX Level 1 OWL file] - Status: Final. Recommend using Level 3.

Revision as of 22:38, 27 March 2013

This pages provides links to the BioPAX specifications and documentation. The latest version is BioPAX Level 3, and it is recommended that users adopt or migrate to this version.

(See other wiki pages in the Category:LEVEL3.)

BioPAX Level3

Posters

Presentations

Publications

BioPAX Level2

BioPAX Level1