Difference between revisions of "Specification"

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[[Category:SPECIFICATION]]
 
[[Category:SPECIFICATION]]
  
This pages provides links to the BioPAX specifications and documentation.  The latest version is BioPAX Level 3, and it is recommended that users adopt or migrate to this version.
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This pages provides links to the BioPAX specifications and documentation.  The latest version is BioPAX Level 3, and it is recommended that users adopt or migrate to this version. (See other wiki pages in the [http://sourceforge.net/apps/mediawiki/biopax/index.php?title=Category:LEVEL3 Category:LEVEL3].)
 
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(See other wiki pages in the [http://sourceforge.net/apps/mediawiki/biopax/index.php?title=Category:LEVEL3 Category:LEVEL3].)
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==BioPAX Level3==
 
==BioPAX Level3==
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* [http://www.biopax.org/release/biopax-level3-documentation.pdf Official BioPAX Level 3 Documentation] - Status: Final, Release v1.0 July 2010
 
* [http://www.biopax.org/release/biopax-level3-documentation.pdf Official BioPAX Level 3 Documentation] - Status: Final, Release v1.0 July 2010
 
* [http://www.biopax.org/release/biopax-level3.owl Official BioPAX Level 3 OWL file] - Status: Final, Release v1.0 July 2010
 
* [http://www.biopax.org/release/biopax-level3.owl Official BioPAX Level 3 OWL file] - Status: Final, Release v1.0 July 2010
* [http://www.mygrid.org.uk/OWL/Presentation?url=http://www.biopax.org/release/biopax-level3.owl OWL ontology HTML presentation view]
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* [http://www.biopax.org/owldoc/Level3/ OWLDoc - ontology HTML view]
 
* [http://www.biopax.org/webprotege/ WebProtégé view]
 
* [http://www.biopax.org/webprotege/ WebProtégé view]
* [[L3Data | BioPAX Level 3 Data Sources]]
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* [http://github.com/BioPAX/specification The latest BioPAX and examples (on Github)]
* [http://sourceforge.net/p/biopax/code/ The latest BioPAX and examples (Mercurial SCM)]
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=== Posters ===
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* Presented at [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E ISMB]|[http://www.iscb.org/uploaded/css/58/17048.pdf Abstract]|[http://www.biopax.org/Documentation/BioPAXISMB2010_NADIA.pdf PDF]
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* Presented at [http://www.iscb.org/cshals2010-program/cshals2010-call-for-posters CSHALS 2010]|[http://www.iscb.org/cms_addon/conferences/cshals2010/posters/BioPAXCSHALS10.pdf PDF]
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* Presented at [http://www.rothamsted.bbsrc.ac.uk/bab/conf/ib2010/  IB2010]|[http://www.rothamsted.bbsrc.ac.uk/bab/conf/ib2010/posterpdfs/BioPAXL32009_NADIA.pdf PDF]
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=== Presentations  ===
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*[http://www.biopax.org/Documentation/Level3updateWorkshopNov2009.ppt Level 3 Presentation NOV2009 ]
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*[http://www.biopax.org/Documentation/BioPAXTutorialNov2009.pdf BioPAX Tutorial NOV 2009 ]
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*%TODO add more... (HARMONY'11, COMBINE'12, HARMONY'12, HARMONY'13, etc...)
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=== Publications ===
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*The BioPAX community standard for pathway data sharing. [http://www.nature.com/nbt/journal/v28/n9/full/nbt.1666.html Nature Biotechnology 28, 935–942 (2010)]
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==BioPAX Level2==
 
==BioPAX Level2==
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** [http://biopax.hg.sourceforge.net/hgweb/biopax/biopax/file/default/Level2/examples BioPAX L2 Examples]
 
** [http://biopax.hg.sourceforge.net/hgweb/biopax/biopax/file/default/Level2/examples BioPAX L2 Examples]
 
** [http://biopax.cvs.sourceforge.net/viewvc/biopax/biopax/release2/biopax-level2-documentation.pdf?view=log Documentation]
 
** [http://biopax.cvs.sourceforge.net/viewvc/biopax/biopax/release2/biopax-level2-documentation.pdf?view=log Documentation]
** [http://www.mygrid.org.uk/OWL/Presentation?url=http://www.biopax.org/release/biopax-level2.owl Auto-generated ontology documentation]
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** [http://www.biopax.org/owldoc/Level2/ Auto-generated ontology documentation]
  
 
==BioPAX Level1==
 
==BioPAX Level1==

Latest revision as of 14:49, 25 June 2015


This pages provides links to the BioPAX specifications and documentation. The latest version is BioPAX Level 3, and it is recommended that users adopt or migrate to this version. (See other wiki pages in the Category:LEVEL3.)

BioPAX Level3

BioPAX Level2

BioPAX Level1