Difference between revisions of "Specification"

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* [http://www.biopax.org/release/biopax-level3-documentation.pdf Official BioPAX Level 3 Documentation] - Status: Final, Release v1.0 July 2010
 
* [http://www.biopax.org/release/biopax-level3-documentation.pdf Official BioPAX Level 3 Documentation] - Status: Final, Release v1.0 July 2010
 
* [http://www.biopax.org/release/biopax-level3.owl Official BioPAX Level 3 OWL file] - Status: Final, Release v1.0 July 2010
 
* [http://www.biopax.org/release/biopax-level3.owl Official BioPAX Level 3 OWL file] - Status: Final, Release v1.0 July 2010
* [http://biopax.sourceforge.net/biopax-site/owldoc/Level3/ OWLDoc - ontology HTML view]
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* [http://www.biopax.org/owldoc/Level3/ OWLDoc - ontology HTML view]
 
* [http://www.biopax.org/webprotege/ WebProtégé view]
 
* [http://www.biopax.org/webprotege/ WebProtégé view]
* [http://sourceforge.net/p/biopax/code/ The latest BioPAX and examples (Mercurial SCM)]
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* [http://github.com/BioPAX/specification The latest BioPAX and examples (on Github)]
 
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=== Posters ===
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* Presented at [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E ISMB]|[http://www.iscb.org/uploaded/css/58/17048.pdf Abstract]|[http://www.biopax.org/Documentation/BioPAXISMB2010_NADIA.pdf PDF]
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* Presented at [http://www.iscb.org/cshals2010-program/cshals2010-call-for-posters CSHALS 2010]|[http://www.iscb.org/cms_addon/conferences/cshals2010/posters/BioPAXCSHALS10.pdf PDF]
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* Presented at [http://www.rothamsted.bbsrc.ac.uk/bab/conf/ib2010/  IB2010]|[http://www.rothamsted.bbsrc.ac.uk/bab/conf/ib2010/posterpdfs/BioPAXL32009_NADIA.pdf PDF]
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=== Presentations  ===
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*[http://www.biopax.org/Documentation/Level3updateWorkshopNov2009.ppt Level 3 Presentation NOV2009 ]
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*[http://www.biopax.org/Documentation/BioPAXTutorialNov2009.pdf BioPAX Tutorial NOV 2009 ]
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*%TODO add more... (HARMONY'11, COMBINE'12, HARMONY'12, HARMONY'13, etc...)
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=== Publications ===
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*The BioPAX community standard for pathway data sharing. [http://www.nature.com/nbt/journal/v28/n9/full/nbt.1666.html Nature Biotechnology 28, 935–942 (2010)]
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==BioPAX Level2==
 
==BioPAX Level2==
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** [http://biopax.hg.sourceforge.net/hgweb/biopax/biopax/file/default/Level2/examples BioPAX L2 Examples]
 
** [http://biopax.hg.sourceforge.net/hgweb/biopax/biopax/file/default/Level2/examples BioPAX L2 Examples]
 
** [http://biopax.cvs.sourceforge.net/viewvc/biopax/biopax/release2/biopax-level2-documentation.pdf?view=log Documentation]
 
** [http://biopax.cvs.sourceforge.net/viewvc/biopax/biopax/release2/biopax-level2-documentation.pdf?view=log Documentation]
** [http://biopax.sourceforge.net/biopax-site/owldoc/Level2/ Auto-generated ontology documentation]
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** [http://www.biopax.org/owldoc/Level2/ Auto-generated ontology documentation]
  
 
==BioPAX Level1==
 
==BioPAX Level1==

Latest revision as of 14:49, 25 June 2015


This pages provides links to the BioPAX specifications and documentation. The latest version is BioPAX Level 3, and it is recommended that users adopt or migrate to this version. (See other wiki pages in the Category:LEVEL3.)

BioPAX Level3

BioPAX Level2

BioPAX Level1