BioPAX - Biological Pathway Exchange
Specification
This pages provides links to the BioPAX specifications and associated documentation. The latest version is BioPAX Level 3 and it is recommended that users adopt or migrate to this version.
Level3
- Supports metabolic pathways, signaling pathways (including states of molecules and generic molecules), gene regulatory networks, molecular interactions, genetic interactions. Not backwards compatible with Level 2.
- Official BioPAX Level 3 OWL file - Status: Final, Release v1.0 July 2010
- Official BioPAX Level 3 Documentation - Status: Final, Release v1.0 July 2010
- BioPAX Level 3 Data Sources
- Developer resources
- BioPAX Mercurial home - browse the Mercurial versioning system repository from the root
- BioPAX Level 3 OWL - Current OWL
- BioPAX Level 3 OWL - Revision history
- Auto-generated ontology documentation
- webprotege
- Documentation
- Examples
Level2
- Supports metabolic pathways, signaling pathways, molecular interactions. Backwards compatible with Level 1.
- Official BioPAX Level 2 OWL file - Status: Final. Recommend using Level 3.
- Official BioPAX Level 2 Documentation - Status: Final. Recommend using Level 3.
- BioPAX Level 2 Data Sources
- Developer resources
- BioPAX CVS home - all versions from the previously used CVS version management system.
- BioPAX Examples
- Documentation
- Auto-generated ontology documentation
Level1
- Supports metabolic pathways.
- Official BioPAX Level 1 OWL file - Status: Final. Recommend using Level 3.
- Official BioPAX Level 1 Documentation - Status: Final. Recommend using Level 3.
- BioPAX Level 1 Data Sources
- Developer resources
- BioPAX CVS home - all versions from the previously used CVS version management system.
- BioPAX Examples
- Documentation
- Auto-generated ontology documentation
Other
Follow the BioPAX development logs
BioPAX Specification Category